Best Cruise Ship Excursions in Malta

Top 5 Must-Do Shore Excursions in Malta for Cruise Ship Passengers

You’ve just sailed into one of the most spectacular harbours in the Mediterranean. The limestone walls of Valletta rise before you, honey-coloured in the morning sun. Your cruise ship docks in Malta, and you have just a few precious hours to explore this island paradise packed with 7,000 years of history.

But where to start? How do you make the most of your brief time here?

As a family run business in Malta with 12 years of experience in the tourism sector, we’ve explored Malta and chatted with countless cruise ship excursions passengers facing this exact dilemma. This guide cuts through the confusion to bring you the absolute best shore excursions that maximise your limited time in port.

What to Expect on a Malta Shore Excursion?

Most cruise ship excursions in Malta today dock at the Valletta Cruise Port, situated beneath the impressive bastions of the capital city. With typically 6–10 hours in port, it’s important to plan your itinerary wisely to explore the best of what this fascinating destination has to offer. While it’s not enough time to see everything, a well-organised tour can help you experience Malta’s highlights from historic landmarks and vibrant streets to crystal-clear coastal spots.

Your ship will likely arrive early in the morning (around 8:00 AM) and depart by evening (5:00–6:00 PM), giving you just enough time for a memorable shore-side adventure. The terminal itself is well-equipped, offering information desks, shops, and cafés to get you started.

Ship-Sponsored vs. Independent Options

When your cruise docks in Malta, you’ll face a key decision: should you book a ship-sponsored excursion or go for an independent option?

Ship-sponsored excursions offer convenience and peace of mind. They guarantee you’ll get back to the ship on time. If there’s a delay, the ship waits. Plus, all transportation is arranged for you. But there’s a catch: these tours often come with a hefty markup, typically 30–50% more expensive. They also tend to cater to larger groups, moving at the pace of the slowest member, which can limit how much you see and experience.

In contrast, independent tours like many of the Malta private boat tours available can offer a higher quality, more personalised experience. You’ll often explore in smaller groups, which means more time at each stop and a more relaxed pace. Many local operators, especially those offering guided tours like GOZOblu Private Boat Tours, are experienced with cruise schedules and tailor their itineraries to maximise your time ashore. You’ll also benefit from more scenic, flexible routes and a price guarantee that usually beats the cruise line’s rates.

Most importantly, booking independently helps support local businesses and lets you experience Malta’s natural wonders like the Blue Lagoon and Comino’s sea caves in a more authentic, unforgettable way.

Want to dive deeper? Read this blog post: Why Booking a Private Boat Tour is the Best Way to Experience the Blue Lagoon Malta to learn how a private tour can transform your visit into a once-in-a-lifetime experience.

Seasonal Sweet Spots

Malta enjoys 300+ days of sunshine annually, but timing matters:

Summer (June-August): Expect hot temperatures (85-95°F/30-35°C) and the biggest crowds, especially at water attractions like the Blue Lagoon. Water activities shine during this season.
Shoulder Season (April-May, September-October): Pleasant temperatures, fewer crowds, and the sea is still warm enough for swimming.
Winter (November-March): Mild temperatures (55-65°F/13-18°C) but occasional rain. Perfect for historical sites and cultural experiences with minimal crowds, though some boat tours reduce their schedules.

Now, let’s explore the absolute best ways to spend your day in port!

Cruise Ship Excursions #1: Valletta Historic Walking Tour

If you can only do one thing in Malta, make it a Valletta city tour. This compact, 16th-century UNESCO World Heritage city packs more historical sites per square inch than almost anywhere else in Europe. Built by the Knights of St. John after the Great Siege of 1565, Valletta remains a perfectly preserved fortified city, ideal for a half-day day trip packed with history, architecture, and unforgettable views.

Why It's Worth Your Time

No need for taxis or transport, Valletta begins where your ship docks. Its compact size means you can sightsee its top landmarks in just 3–4 hours, making it a perfect shore excursion for cruise visitors.

Must-See Highlights

St. John’s Co Cathedral: Don’t let the plain exterior fool you. Step inside to discover one of Europe’s most opulent baroque interiors. The floor is covered with 400+ inlaid marble tombstones of knights, while the Oratory houses Caravaggio’s masterpiece “The Beheading of St. John.” (€15 entry; closed on Sundays and public holidays).

Upper Barrakka Gardens: Just a 5-minute stroll from the port, these gardens offer panoramic views over the Grand Harbour. Don’t miss the Saluting Battery cannon fire at noon, a memorable photo op. (Free entry)

Grand Master’s Palace and Armory: The administrative heart of Malta for centuries, housing one of Europe’s finest collections of arms and armor. (€10 entry)

Lascaris War Rooms: This underground complex housed Britain’s War Headquarters during WWII and Malta’s defense operations. Fascinating for history buffs. (€12 entry)

Insider Tips for Your Valletta Day Trip

Start your walk early to avoid both crowds and midday heat.
Many attractions open at 9:00 AM – check current hours before planning.
For lunch, skip the touristy harbourfront places and duck into a side street. Try “Nenu the Artisan Baker” for authentic Maltese ftira (flatbread) or “Caffe Cordina” (in service since 1837) for pastizzi – savoury pastries filled with ricotta or mushy peas.
Download the Valletta audio guide app before your trip for a self-guided tour.
The city is built on a hill with lots of steps – wear comfortable walking shoes and be prepared for some inclines if mobility is a concern.

Cruise Ship Excursions #2: Blue Lagoon and Comino Island Boat Tour

For a complete contrast to Valletta’s historical richness, set your sights on the breathtaking Blue Lagoon Malta, a natural swimming pool famed for its crystal-clear turquoise waters. Nestled between the tiny island of Comino and the even smaller islet of Cominotto, this stunning spot consistently ranks among Malta’s top destinations.

Why It’s One of the Best Excursions in Malta

The Blue Lagoon Malta boat trips are among the best excursions you can take while visiting the islands. The surreal blue hue comes from sunlight reflecting off the white sandy seabed, creating a shimmering, almost surreal aquatic scene that’s perfect for swimming, snorkelling, and relaxing. It’s no surprise the blue lagoon is one of the most photographed places in Malta, an unforgettable experience whether you’re after relaxation or something more adventurous.

How to Visit? Options for Every Traveller

Whether you’re travelling solo, with a partner, or in a group, there are multiple ways to reach this island paradise:

Group Tour

Join a group tour aboard a large catamaran or motor vessel, with departures from Sliema, just 25 minutes from Valletta. These Malta boat tours typically last half a day and cost €25–35 per person. Most include stops at nearby bays and sea caves, making it a budget-friendly way to explore Comino.

Private Boat Tour Malta: The GOZOblu Experience

For a more intimate and luxurious experience, we highly recommend booking with GOZOblu Private Boat Tours. Tailored for small groups, GOZOblu offers private boat tours Malta that allow you to explore at your own pace, arrive before the crowds, and visit hidden gems like Crystal Lagoon or Santa Marija Bay.

Enjoy exclusive onboard perks including complimentary bottled water, snorkelling gear, and even a GoPro camera to capture your adventure in stunning detail. Experience unmatched performance and comfort aboard our brand-new 30ft Zodiac Medline 900, powered by twin Yamaha 300hp engines (600hp total). As the most powerful RIB in our fleet, it’s perfect for exploring Malta, Gozo, and Comino in style, speed, and luxury.

With prices starting from €199 for up to 8 people, GOZOblu is the ideal choice for those seeking unforgettable experiences with a knowledgeable captain who knows Comino inside and out.

Speedboat Transfers

Pressed for time? Some operators offer high-speed options that cut the transit time to under an hour, so you can spend more time swimming and less time travelling.

Dealing with Crowds at the Blue Lagoon

It’s no secret that the Blue Lagoon gets busy especially in summer. Here’s how to make the most of your visit:

Book an early morning private boat tour with GOZOblu to beat the rush
Consider visiting quieter spots like Crystal Lagoon or Santa Marija Bay
Avoid peak cruise ship days, when thousands may flock to Comino
Travel in shoulder season (May or September) for a more serene vibe

Essential Tips for Your Comino Tour

Bring water shoes. The rocky shores can be sharp
Pack sunscreen, water, and a hat (shade is limited)
Snorkelling gear is highly recommended to explore the vibrant underwater world
Bring some cash for food and drinks on the island
Most tours allow 3–4 hours at the lagoon, with onboard perks like slides, snorkel gear rental, and drinks

Cruise Ship Excursions #3: Mdina and Rabat Heritage Experience

While Valletta cruise passengers often head straight to the capital, Malta’s former capital deserves equal attention. Mdina, the “Silent City,” offers a completely different historical experience that transports you back to medieval times.

Why It's Worth Your Time

Perched on a hill in the centre of Malta, Mdina has remained largely unchanged since the 16th century. Its narrow, winding streets create a magical atmosphere that earned it a starring role in Game of Thrones as “King’s Landing.” The contrast between silent, noble Mdina and neighbouring working-class Rabat creates a perfect historical pairing.

Getting There

Mdina lies about 8 miles (13km) from Valletta. Your options include:

Public Bus: Routes 51, 52, or 53 from Valletta take approximately 30-40 minutes and cost €2 for a day ticket. Bus reliability can vary, so build in buffer time.
Taxi: Expect to pay €15-20 each way. Ask your driver to wait or arrange a pickup time for the return.

Organised Tours: Many operators offer half-day Mdina tours from the cruise port, often combining it with other nearby attractions.

Must-See Highlights

Mdina Main Gate: Walking through this baroque entrance sets the stage for your journey back in time.

Mdina Cathedral: This 17th-century baroque masterpiece stands on the site of a much older Norman church. The adjacent museum houses rare religious artifacts and artwork.

Palazzo Falson: Malta’s second-oldest building showcases how nobility lived, with fascinating collections of antiques, art, and armor.

St. Paul’s Catacombs: Located in neighboring Rabat, these early Christian burial chambers date back to the 4th century and extend over 2,000 square meters underground.

Roman Villa (Domus Romana): Discover exquisite mosaic floors from a 1st-century BC aristocratic Roman townhouse.

Time Management Strategy

Allocate 3-4 hours total:

Mdina walk and cathedral: 1.5 hours
Lunch: 45 minutes
St. Paul’s Catacombs: 45 minutes
Roman Villa: 30 minutes

Have limited time? Focus on simply walking Mdina’s walls and streets – even a quick 1-hour visit creates lasting memories.

Insider Tips

Visit Fontanella Tea Garden for their famous chocolate cake and panoramic views from the bastions
Enter through the main gate but exit through the Greek Gate for spectacular countryside views
Mdina is car-free, making it wonderfully peaceful – listen for the echoes of your footsteps
Combined tickets for multiple Rabat sites offer good savings

Cruise Ship Excursions #4: Three Cities and Harbour Cruise

While most visitors focus on Valletta, few discover the equally historic “Three Cities” directly across the harbor. This excursion combines authentic local life with spectacular views and maritime history.

Why It's Worth Your Time

The Three Cities (Vittoriosa, Senglea, and Cospicua) predate Valletta and were the first home of the Knights of St. John in Malta. Here, you’ll experience genuine Maltese community life away from main tourist routes while enjoying perhaps the best views of Valletta itself.

This area receives significantly fewer tourists than Valletta despite being just as historic – meaning authentic experiences without the crowds.

Getting There and Getting Around

The most enjoyable way to reach the Three Cities from your cruise ship is by traditional water taxi (dgħajsa) – colourful wooden boats that have transported people across the harbor for centuries. These depart from near the cruise terminal and cost about €2 per person one-way for a 5-minute journey.

Alternatively, a regular ferry service crosses from Valletta to Vittoriosa for €1.50 each way.

Once there, the Three Cities are best explored on foot, with walking paths connecting all three.

Key Highlights

Maritime Museum: Housed in the former British Naval Bakery in Vittoriosa, this excellent museum chronicles Malta’s rich maritime history with ship models, navigational instruments, and maritime artifacts.

Fort St. Angelo: This fortress guarded the harbour since medieval times. Recently restored, it offers stunning panoramic views and insight into Malta’s military history.

Gardjola Gardens: These small but beautiful gardens in Senglea feature a famous watchtower with carved eyes and ears – symbols of vigilance protecting the harbor.

Inquisitor’s Palace: One of the few surviving inquisitor’s palaces in Europe, offering a fascinating glimpse into this powerful historical institution.

Perfect Half-Day Itinerary

For a time-efficient 3-4 hour visit:

Take a dgħajsa water taxi from Valletta
Walk the Vittoriosa waterfront and visit Maritime Museum (1 hour)
Continue to Senglea Point for harbour views (30 minutes)
Return via Cospicua, stopping at a local pastizzeria for authentic Maltese snacks (30 minutes)
Complete the experience with a 30-minute harbour cruise to see the fortifications from water (€15)
Return to your cruise ship by water taxi

Local Experience Tips

For an authentic lunch, try D Centre Café or Tal-Petut for traditional Maltese cuisine
The Three Cities’ feast of St. Dominic (early August) is spectacular if you’re lucky enough to visit then
The area is significantly less crowded in afternoons
Several excellent wine bars have opened in renovated historic buildings along the Vittoriosa waterfront

Cruise Ship Excursions #5: Gozo Island Highlights Tour

Looking to escape the buzz of Malta on your cruise vacation? Gozo is Malta’s sister island. It’s a peaceful, greener, and more rural counterpart, offering dramatic landscapes, ancient temples, and charming villages. As far as cruise ship shore excursions go, this is one of the most rewarding, but also the most logistically complex. That’s why having everything you need to know in advance is key.

Why It's Worth Your Time

Gozo offers a glimpse into a more traditional Maltese lifestyle, one that’s quickly vanishing on the main island. Add stunning scenery, quiet countryside roads, historic churches, and prehistoric temples older than the pyramids, and you’ve got an unforgettable cruise destination.

Despite the extra planning required, many travellers say it’s the highlight of their quality cruise shore excursions. Whether you’re into scuba, kayaking, adrenaline-fueled activities, or just want to find the best things to see on land, Gozo has something special.

Logistics and Options

Getting to Gozo from your cruise port involves multiple steps:

Drive from Valletta to Ċirkewwa ferry terminal (~45 minutes)
Ferry crossing to Gozo (~25 minutes)
On-island transportation
Return trip to your cruise ship

Due to timing constraints, it’s highly recommended to customise your itinerary through one of the following:

A cruise-organised Gozo excursion (guaranteed timely return)
A reputable private tour company with cruise ship experience
A Gozo hop-on-hop-off bus tour with ferry transfers included

Pro Tip: For a seamless and scenic experience, book a Gozo boat tour with GOZOblu Private Boat Tours. Our personalised tours are designed to match cruise schedules and highlight the very best of Gozo by sea and land.

Must-See Gozo Highlights

Victoria (Rabat)
Explore the historic Citadel with panoramic views across the island. Skip the shops and focus on the Citadel to save time.

Dwejra Bay
Although the Azure Window collapsed in 2017, the Inland Sea and surrounding formations are still jaw-dropping.

Ġgantija Temples
Older than Stonehenge and the Egyptian pyramids, these are a must-see for history buffs.

Ta’ Pinu Basilica
A spiritual landmark set in rolling countryside, perfect for quick photo stops and quiet reflection.

Ramla Bay
Time permitting, this red-sand beach is one of the most unique in the Mediterranean.

Is It Doable During a Cruise Stop?

Yes but you’ll need to be strategic.

Allocate at least 8 hours total
Depart early in the day
Build in a 60–90-minute buffer for your return
Have a contingency plan in case of ferry or weather issues
Opt for a pre-arranged tour rather than going solo

Time-Saving Tips

Skip Victoria’s shops—focus on the Citadel only
Visit either Ġgantija OR Ta’ Pinu, not both
Hire a private driver/guide for flexibility and speed
Bring lunch to enjoy en route instead of sitting down

Make It Effortless with GOZOblu Private Boat Tours

For those seeking the best Malta boat tours and wanting to blend coastal exploration with cultural stops, GOZOblu offers a perfect balance. Our expert captains know how to avoid crowds, maximise your time, and ensure you’re back well before your ship departs.

Whether you’re travelling solo, as a couple, or in a small group, GOZOblu can customise your tour to include Gozo’s greatest hits or hidden gems you’d never find on a big group excursion.

Gozo is more than just a cruise stop, it’s a Mediterranean gem. With the right planning or a trusted local guide, it might just be the highlight of your Caribbean style cruise adventure in Malta.

Essential Port Day Tips

Confirm ship time vs. local time (they’re sometimes different)
Bring a portable phone charger
Get a local SIM card or activate an international plan, mobile data is essential for using Google Maps and staying connected on WhatsApp.
Wear comfortable walking shoes, Malta’s historic areas have uneven surfaces
Carry water and sun protection year-round
Most places accept credit cards, but small vendors may require cash
Emergency ship contact: Program your cruise line’s emergency number before leaving
Take a ship card or photo of port information board showing all-aboard time

Beyond the Top 5: Hidden Gems for Repeat Visitors

If you’re lucky enough to be returning to Malta or have a longer stay, consider these excellent alternatives:

Lesser-Known Treasures

Marsaxlokk Fishing Village: This colorful harbor filled with traditional painted fishing boats (luzzu) comes alive during the Sunday morning fish market. Just 25 minutes from Valletta by bus.

Hypogeum: This underground prehistoric burial site requires tickets booked months in advance but offers an extraordinary glimpse into Malta’s ancient past.

Dingli Cliffs: Malta’s highest point provides dramatic sea views, especially at sunset.

Specialised Tours: Consider wine tasting at Marsovin winery, traditional food tours, or craft village visits.

Alternative Beach Experiences

For those seeking sand rather than the rocky Blue Lagoon Malta:

Golden Bay: A beautiful sandy beach on Malta’s northwest coast, accessible by public bus.

Għajn Tuffieħa Bay: A scenic and quieter beach known for its reddish sand and dramatic cliffs.

Pretty Bay: Less known but conveniently close to the cruise port in the south.

St. Peter’s Pool: A natural swimming pool with crystal clear waters and flat rocks perfect for sunbathing.

Local Festivals Worth Planning Around

Malta hosts village “festas” throughout summer, with elaborate decorations, processions, and fireworks. If your cruise coincides with one, they’re worth experiencing. Check the Tourism Authority calendar for updated schedules.

Your Pre-Departure Checklist

Before heading off to explore, make sure you:

Double-check all-aboard time and set phone alarms
Carry ship ID and port information
Have comfortable walking shoes, sun protection, and water
Bring camera/phone and portable charger
Have maps downloaded for offline use
Carry some Euro cash for small purchases
Know how to contact tour operators if needed
Have travel insurance details accessible

Frequently Asked Questions

Is Malta safe for cruise passengers?

Absolutely! Malta has one of Europe’s lowest crime rates. Exercise normal precautions regarding valuables. The main hazards are sunburn and dehydration during summer months.

How much cash should I bring ashore?

For a day in port, €50-100 per person should suffice for meals, entrance fees, and souvenirs. Major attractions, restaurants, and shops accept credit cards, but small vendors and some transportation might require cash.

Can I see all the main attractions in one day?

Unfortunately, no. Malta packs an extraordinary amount of history and beauty into a small area. Rather than trying to see everything, choose one or two excursions from this guide and enjoy them thoroughly. Malta deserves a return visit!

What if my ship arrives late or departs early?

For independent bookings, choose operators with flexible cancellation policies. Many local companies monitor ship arrivals and adjust accordingly. Ship-sponsored excursions will wait for late arrivals or ensure you return on time.